chr17:7578532:A>G Detail (hg19) (TP53)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr17:7,578,532-7,578,532
hg38	chr17:7,675,214-7,675,214 View the variant detail on this assembly version.

HGVS

TP53

Type	Transcript	Protein
RefSeq	NM_001126116.1:c.2T>C	NP_001119588.1:p.?
	NM_001276698.1:c.2T>C	NP_001263627.1:p.?
	NM_001126117.1:c.-80T>C
	NM_001276699.1:c.-80T>C
	NM_000546.5:c.398T>C	NP_000537.3:p.Met133Thr
	NM_001126112.2:c.398T>C	NP_001119584.1:p.Met133Thr
	NM_001276760.1:c.398T>C	NP_001263689.1:p.Met133Thr
	NM_001276761.1:c.398T>C	NP_001263690.1:p.Met133Thr
	NM_001126113.2:c.398T>C	NP_001119585.1:p.Met133Thr
	NM_001276695.1:c.398T>C	NP_001263624.1:p.Met133Thr
	NM_001126118.1:c.281T>C	NP_001119590.1:p.Met94Thr
	NM_001126115.1:c.-80T>C
	NM_001276697.1:c.-80T>C
	NM_001276696.1:c.281T>C	NP_001263625.1:p.Met94Thr
Ensemble	ENST00000445888.6:c.398T>C	ENST00000445888.6:p.Met133Thr
	ENST00000604348.6:c.377T>C	ENST00000604348.6:p.Met126Thr
	ENST00000510385.5:c.2T>C	ENST00000510385.5:p.?
	ENST00000504937.5:c.2T>C	ENST00000504937.5:p.?
	ENST00000576024.2:c.398T>C	ENST00000576024.2:p.Met133Thr
	ENST00000504290.5:c.2T>C	ENST00000504290.5:p.?
	ENST00000610623.4:c.-80T>C
	ENST00000618944.4:c.-80T>C
	ENST00000269305.9:c.398T>C	ENST00000269305.9:p.Met133Thr
	ENST00000359597.8:c.398T>C	ENST00000359597.8:p.Met133Thr
	ENST00000455263.6:c.398T>C	ENST00000455263.6:p.Met133Thr
	ENST00000413465.6:c.398T>C	ENST00000413465.6:p.Met133Thr
	ENST00000420246.6:c.398T>C	ENST00000420246.6:p.Met133Thr
	ENST00000610292.4:c.281T>C	ENST00000610292.4:p.Met94Thr
	ENST00000610538.4:c.281T>C	ENST00000610538.4:p.Met94Thr
	ENST00000619186.4:c.-80T>C
	ENST00000619485.4:c.281T>C	ENST00000619485.4:p.Met94Thr
	ENST00000620739.4:c.281T>C	ENST00000620739.4:p.Met94Thr
	ENST00000622645.4:c.281T>C	ENST00000622645.4:p.Met94Thr
	ENST00000714356.1:c.281T>C	ENST00000714356.1:p.Met94Thr
	ENST00000714357.1:c.398T>C	ENST00000714357.1:p.Met133Thr
	ENST00000714359.1:c.398T>C	ENST00000714359.1:p.Met133Thr
	ENST00000714408.1:c.398T>C	ENST00000714408.1:p.Met133Thr
	ENST00000714409.1:c.398T>C	ENST00000714409.1:p.Met133Thr

Summary

MGeND

Clinical significance	Pathogenic not provided
Variant entry	7
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

TP53

Type	Database	ID	Link
Gene	MIM	191170	OMIM
	HGNC	11998	HGNC
	Ensembl	ENSG00000141510	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM3712458	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Condition	Origin	Submission ID	Submitter	Institute
not provided	oesophagus, unspecified	not provided	MGS000040 (TMGS000095)	Hitoshi Nakagama	National Cancer Center Japan
not provided	Myelodysplastic syndromes	somatic	MGS000005 (TMGS000006)	Keizo Horibe	National Hospital Organization Nagoya Medical Center
Pathogenic	Adenocarcinoma of small intestine (disorder)	unknown	MGS000021 (TMGS000080)	Manabu Muto	Kyoto University
not provided	oesophagus, unspecified	not provided	MGS000042 (TMGS000093)	Hitoshi Nakagama	National Cancer Center Japan
not provided	malignant neoplasm of rectum	not provided	MGS000042 (TMGS000093)	Hitoshi Nakagama	National Cancer Center Japan
not provided	bronchus or lung, unspecified	not provided	MGS000042 (TMGS000093)	Hitoshi Nakagama	National Cancer Center Japan
not provided	body of pancreas	not provided	MGS000041 (TMGS000094)	Hitoshi Nakagama	National Cancer Center Japan

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2022-06-18	criteria provided, single submitter	Li-Fraumeni syndrome 1	germline	Detail
Pathogenic	2023-10-26	criteria provided, multiple submitters, no conflicts	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2021-06-09	criteria provided, single submitter	Li-Fraumeni syndrome	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.441	Li-Fraumeni syndrome 1	NA	CLINVAR		Detail
0.005	Acute Erythroblastic Leukemia	In conclusion, persistently active STAT5 can recruit normal p53, like in the cas...	BeFree	24681953	Detail
0.441	Li-Fraumeni syndrome 1	We report here on the identification of a p53 germ line mutation at codon 133 (A...	UNIPROT	1933902	Detail

Annotation

Annotations

Descrption	Source	Links
NM_000546.6(TP53):c.398T>C (p.Met133Thr) AND Li-Fraumeni syndrome 1	ClinVar	Detail
NM_000546.6(TP53):c.398T>C (p.Met133Thr) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000546.6(TP53):c.398T>C (p.Met133Thr) AND Li-Fraumeni syndrome	ClinVar	Detail
NA	DisGeNET	Detail
In conclusion, persistently active STAT5 can recruit normal p53, like in the case of MPN cells, but ...	DisGeNET	Detail
We report here on the identification of a p53 germ line mutation at codon 133 (ATG----ACG) in nine m...	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs28934873 dbSNP
Genome: hg19
Position: chr17:7,578,532-7,578,532
Variant Type: snv
Reference Allele: A
Alternative Allele: G

Genome browser

chr17:7578532:A>G Detail (hg19) (TP53)

Genome

HGVS

MGeND

Frequency

Prediction

ClinVar

Image provided by the submitter

Annotations

Overlapped Transcript Coordinates

Overlapped Transcript